I'm using Netbeans and CVS to checkout Drupal core and contributed modules. Drupal core goes in the "root" of my working copy (sandbox), but the modules go a few levels deep from that. Example: /sites/all/modules/module_name.
In the repository, the modules are in contributions/modules/module_name
The problem is: when I checkout a module and give the above path in the repository, then enter the destination path, Netbeans combines the two, so the module(s) end up in: